covidseir fits a Bayesian SEIR (Susceptible, Exposed, Infectious, Recovered) model to daily COVID-19 case data. The package focuses on estimating the fraction of the usual contact rate for individuals participating in physical distancing (social distancing). The model is coded in Stan. The model can accommodate multiple types of case data at once (e.g., reported cases, hospitalizations, ICU admissions) and accounts for delays between symptom onset and case appearance. [1]
Software »Software
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Fitting dynamical models to data »Fitting dynamical models to data
Simulation »Simulation
Stochastic »Stochastic
Stan »Stan
R »R
C++ »C++
British Columbia COVID-19 Group »British Columbia COVID-19 Group
CANMOD – Tools »CANMOD – Tools
Caroline Colijn »Caroline Colijn
Covid-19 »Covid-19
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