CitationsAdd new citationList by: CiterankMap Link[2] epitrix
Author: Thibaut Jombart, Anne Cori, Zhian N. Kamvar, Dirk Schumacher, Flavio Finger, Charlie Whittaker Publication date: 13 January 2023 Cited by: David Price 11:27 PM 30 January 2023 GMT URL: | Excerpt / Summary The main features of the package include:
• gamma_shapescale2mucv: convert shape and scale of a Gamma distribution to mean and CV
• gamma_mucv2shapescale: convert mean and CV of a Gamma distribution to shape and scale
• gamma_log_likelihood: Gamma log-likelihood using mean and CV
• r2R0: convert growth rate into a reproduction number
• lm2R0_sample: generates a distribution of R0 from a log-incidence linear model
• fit_disc_gamma: fits a discretised Gamma distribution to data (typically useful for describing delays)
• clean_labels: generate portable labels by removing non-standard characters or replacing them with their closest alphanumeric matches, standardising separators, etc.
• hash_names: generate unique, anonymised, reproducible labels from various data fields (e.g. First name, Last name, Date of birth).
• emperical_incubation_dist() will estimate the empirical incubation distribution if given a data frame with dates of onset and a range of exposure dates.
• fit_gamma_incubation_dist() wraps empirical_incubation_dist() and fit_disc_gamma() to fit a discretized gamma distribution to an empirical incubation distribution |
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