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pathogen.jl

Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia

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EIDM 
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Software
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Software programs
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pathogen.jl
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Julia
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Data analysis
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Fitting dynamical models to data
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Simulation
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Compartmental
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Agent-based
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Stochastic
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Rob Deardon
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Simulation
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Agent-based models
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Pathogens
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Age-Patch Mobility Mixing
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AlgebraicJulia
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Bayesian Evolutionary Analysis by Sampling Trees (BEAST)
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CCODWG
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Covasim
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COVID Hospital Surge
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COVID JupyterHub
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COVID Prevalence Estimate
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COVID-19 Re - Generation Time
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covidseir
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CovidSim
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covid-topic-modeling
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Dempster-Shafer Bayesian Network inference package
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diseasemapping
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Efficacy of quarantine
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epi base package for SyncroSim
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EpiEstim
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epigrowthfit
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EpiILM
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EpiILMCT
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Estimating the infection fatality rate of Covid-19
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geostatsp
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Hexagonalfan
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localEM
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Localized Epidemiological Agent-Based Simulation (ABS)
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macpan2
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Mathematical epidemiology in a data-rich world
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McMasterPandemic
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MultiBD
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Ontario pandemic mobility
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Open Data Model
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Pathosim
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plASgraph2
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pmcmc_dynamic_modeling
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Prediction Codes
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PyCoMod
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python Population Modeller
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SamPy
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Stochastic simulations of classroom-level COVID-19 outbreaks
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SyncroSim
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